Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 AP001005.1-201ENST00000571755 1248 ntBASIC19.27■□□□□ 0.68
USP41Q3LFD5 AC008608.2-201ENST00000606089 416 ntBASIC19.27■□□□□ 0.68
USP41Q3LFD5 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP41Q3LFD5 BX640515.1-201ENST00000617215 977 ntBASIC19.27■□□□□ 0.68
USP41Q3LFD5 AL773604.1-201ENST00000617417 272 ntBASIC19.27■□□□□ 0.68
USP41Q3LFD5 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.27■□□□□ 0.68
USP41Q3LFD5 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP41Q3LFD5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP41Q3LFD5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 KRT18P65-201ENST00000439811 1286 ntBASIC19.26■□□□□ 0.67
USP41Q3LFD5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 AL138831.2-201ENST00000606564 490 ntBASIC19.26■□□□□ 0.67
USP41Q3LFD5 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP41Q3LFD5 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP41Q3LFD5 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 KRT18P67-201ENST00000432816 1264 ntBASIC19.25■□□□□ 0.67
USP41Q3LFD5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 AF186996.4-201ENST00000467186 377 ntBASIC19.25■□□□□ 0.67
USP41Q3LFD5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 AC120114.3-201ENST00000611923 658 ntBASIC19.25■□□□□ 0.67
USP41Q3LFD5 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.25■□□□□ 0.67
USP41Q3LFD5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP41Q3LFD5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms