Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX2P48431 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.01■□□□□ 0.15
SOX2P48431 AC026271.3-201ENST00000571884 352 ntBASIC16.01■□□□□ 0.15
SOX2P48431 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 AC073648.6-201ENST00000641589 218 ntBASIC16.01■□□□□ 0.15
SOX2P48431 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX2P48431 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX2P48431 KRT8P50-201ENST00000562022 1438 ntBASIC16.01■□□□□ 0.15
SOX2P48431 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX2P48431 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX2P48431 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
SOX2P48431 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SOX2P48431 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SOX2P48431 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 HLA-DQB1-201ENST00000374943 1656 ntBASIC16■□□□□ 0.15
SOX2P48431 GPAT2P1-201ENST00000444924 1672 ntBASIC16■□□□□ 0.15
SOX2P48431 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 AL353807.1-201ENST00000427475 662 ntBASIC16■□□□□ 0.15
SOX2P48431 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16■□□□□ 0.15
SOX2P48431 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SOX2P48431 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16■□□□□ 0.15
SOX2P48431 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16■□□□□ 0.15
SOX2P48431 MIR6786-201ENST00000616843 113 ntBASIC16■□□□□ 0.15
SOX2P48431 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 PRORSD1P-202ENST00000563365 2154 ntBASIC16■□□□□ 0.15
SOX2P48431 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16■□□□□ 0.15
SOX2P48431 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16■□□□□ 0.15
SOX2P48431 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 AL645608.8-201ENST00000606034 2086 ntBASIC15.99■□□□□ 0.15
SOX2P48431 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 PCDHA12-202ENST00000613593 2588 ntBASIC15.99■□□□□ 0.15
SOX2P48431 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 AC034236.2-201ENST00000606662 1610 ntBASIC15.99■□□□□ 0.15
SOX2P48431 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.99■□□□□ 0.15
SOX2P48431 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 B3GAT3P1-201ENST00000471720 806 ntBASIC15.99■□□□□ 0.15
SOX2P48431 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 C1QBPP2-201ENST00000528754 825 ntBASIC15.99■□□□□ 0.15
SOX2P48431 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 AC006058.3-201ENST00000606217 1069 ntBASIC15.99■□□□□ 0.15
SOX2P48431 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 AC080080.1-201ENST00000625121 2420 ntBASIC15.99■□□□□ 0.15
SOX2P48431 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SOX2P48431 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SOX2P48431 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SOX2P48431 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX2P48431 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.98■□□□□ 0.15
SOX2P48431 AC099398.1-201ENST00000567919 2776 ntBASIC15.98■□□□□ 0.15
SOX2P48431 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX2P48431 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.98■□□□□ 0.15
SOX2P48431 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SOX2P48431 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms