Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.36■□□□□ 0.37
MSX2P35548 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
MSX2P35548 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.35■□□□□ 0.37
MSX2P35548 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
MSX2P35548 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.35■□□□□ 0.37
MSX2P35548 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.35■□□□□ 0.37
MSX2P35548 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.35■□□□□ 0.37
MSX2P35548 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
MSX2P35548 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSX2P35548 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MSX2P35548 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSX2P35548 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MSX2P35548 CROCCP2-202ENST00000412962 2773 ntBASIC17.34■□□□□ 0.37
MSX2P35548 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.34■□□□□ 0.37
MSX2P35548 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MSX2P35548 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 AL118508.1-201ENST00000613502 2345 ntBASIC17.34■□□□□ 0.37
MSX2P35548 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.34■□□□□ 0.37
MSX2P35548 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.34■□□□□ 0.37
MSX2P35548 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
MSX2P35548 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX2P35548 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
MSX2P35548 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX2P35548 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX2P35548 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.33■□□□□ 0.37
MSX2P35548 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX2P35548 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSX2P35548 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX2P35548 PCDH8P1-201ENST00000428983 2773 ntBASIC17.33■□□□□ 0.36
MSX2P35548 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.33■□□□□ 0.36
MSX2P35548 AC091390.4-202ENST00000476426 537 ntBASIC17.33■□□□□ 0.36
MSX2P35548 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 AL138781.1-201ENST00000566567 1274 ntBASIC17.33■□□□□ 0.36
MSX2P35548 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.33■□□□□ 0.36
MSX2P35548 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.33■□□□□ 0.36
MSX2P35548 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MSX2P35548 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MSX2P35548 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.33■□□□□ 0.36
MSX2P35548 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX2P35548 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms