Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL3A1P02461 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL3A1P02461 RCN1P2-201ENST00000398357 915 ntBASIC23.9■■□□□ 1.42
COL3A1P02461 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.9■■□□□ 1.42
COL3A1P02461 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC23.9■■□□□ 1.42
COL3A1P02461 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.9■■□□□ 1.42
COL3A1P02461 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL3A1P02461 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
COL3A1P02461 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC23.9■■□□□ 1.42
COL3A1P02461 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL3A1P02461 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
COL3A1P02461 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL3A1P02461 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.9■■□□□ 1.42
COL3A1P02461 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
COL3A1P02461 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
COL3A1P02461 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.89■■□□□ 1.42
COL3A1P02461 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.89■■□□□ 1.42
COL3A1P02461 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL3A1P02461 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL3A1P02461 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.42
COL3A1P02461 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
COL3A1P02461 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC23.89■■□□□ 1.42
COL3A1P02461 SAPCD2P3-201ENST00000455031 850 ntBASIC23.89■■□□□ 1.42
COL3A1P02461 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.89■■□□□ 1.42
COL3A1P02461 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL3A1P02461 AP001269.4-201ENST00000609611 512 ntBASIC23.89■■□□□ 1.42
COL3A1P02461 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC23.89■■□□□ 1.42
COL3A1P02461 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL3A1P02461 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC23.89■■□□□ 1.42
COL3A1P02461 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.89■■□□□ 1.42
COL3A1P02461 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
COL3A1P02461 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
COL3A1P02461 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL3A1P02461 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL3A1P02461 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.89■■□□□ 1.41
COL3A1P02461 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC23.89■■□□□ 1.41
COL3A1P02461 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL3A1P02461 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL3A1P02461 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL3A1P02461 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC23.88■■□□□ 1.41
COL3A1P02461 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
COL3A1P02461 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.88■■□□□ 1.41
COL3A1P02461 MED29-202ENST00000594368 1471 ntTSL 2 BASIC23.88■■□□□ 1.41
COL3A1P02461 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL3A1P02461 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
COL3A1P02461 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC23.88■■□□□ 1.41
COL3A1P02461 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC23.88■■□□□ 1.41
COL3A1P02461 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 POM121L3P-201ENST00000419331 1163 ntBASIC23.87■■□□□ 1.41
COL3A1P02461 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 AC091304.2-201ENST00000564639 760 ntBASIC23.87■■□□□ 1.41
COL3A1P02461 GZMM-202ENST00000592501 941 ntTSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC23.87■■□□□ 1.41
COL3A1P02461 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC23.87■■□□□ 1.41
COL3A1P02461 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.87■■□□□ 1.41
COL3A1P02461 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.87■■□□□ 1.41
COL3A1P02461 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 PP7080-204ENST00000510714 601 ntTSL 3 BASIC23.87■■□□□ 1.41
COL3A1P02461 AF238378.1-201ENST00000526806 358 ntBASIC23.87■■□□□ 1.41
COL3A1P02461 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL3A1P02461 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL3A1P02461 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL3A1P02461 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL3A1P02461 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL3A1P02461 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
COL3A1P02461 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.86■■□□□ 1.41
COL3A1P02461 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
COL3A1P02461 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
COL3A1P02461 AC009533.2-201ENST00000543664 586 ntBASIC23.86■■□□□ 1.41
COL3A1P02461 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.86■■□□□ 1.41
COL3A1P02461 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
COL3A1P02461 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL3A1P02461 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
COL3A1P02461 AP000997.3-201ENST00000623333 2250 ntBASIC23.85■■□□□ 1.41
COL3A1P02461 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms