Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 AC134043.2-201ENST00000624206 2238 ntBASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS29Q9UBQ0 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 GNAS-203ENST00000306120 1878 ntBASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 ECEL1P3-201ENST00000427961 737 ntBASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 MIR3917-201ENST00000580971 93 ntBASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS29Q9UBQ0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 AC145285.6-201ENST00000604632 637 ntBASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS29Q9UBQ0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms