Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 AC093028.1-201ENST00000622998 982 ntBASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.69■■□□□ 1.06
ZNF541Q9H0D2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 ELL2P1-201ENST00000413990 1906 ntBASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.68■■□□□ 1.06
ZNF541Q9H0D2 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 MYLKP1-201ENST00000509077 1580 ntBASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ELK2BP-201ENST00000415014 1224 ntBASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 GPR89P-201ENST00000407924 1495 ntBASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZNF541Q9H0D2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
ZNF541Q9H0D2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 CRYGEP-201ENST00000412192 528 ntBASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 CEND1P1-201ENST00000451006 455 ntBASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 COX20P2-201ENST00000452636 358 ntBASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AC108073.2-201ENST00000464002 357 ntBASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.65■■□□□ 1.06
ZNF541Q9H0D2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms