Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
TIMP4Q99727 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.68■□□□□ 0.26
TIMP4Q99727 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 HLA-F-220ENST00000434407 884 ntBASIC16.68■□□□□ 0.26
TIMP4Q99727 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
TIMP4Q99727 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.68■□□□□ 0.26
TIMP4Q99727 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 AL136038.4-201ENST00000603606 1261 ntBASIC16.68■□□□□ 0.26
TIMP4Q99727 AC069148.1-201ENST00000608741 768 ntBASIC16.68■□□□□ 0.26
TIMP4Q99727 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.68■□□□□ 0.26
TIMP4Q99727 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.68■□□□□ 0.26
TIMP4Q99727 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TIMP4Q99727 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
TIMP4Q99727 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.67■□□□□ 0.26
TIMP4Q99727 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 MIR3180-4-201ENST00000582223 153 ntBASIC16.67■□□□□ 0.26
TIMP4Q99727 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.67■□□□□ 0.26
TIMP4Q99727 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.67■□□□□ 0.26
TIMP4Q99727 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TIMP4Q99727 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.66■□□□□ 0.26
TIMP4Q99727 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.66■□□□□ 0.26
TIMP4Q99727 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.66■□□□□ 0.26
TIMP4Q99727 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.66■□□□□ 0.26
TIMP4Q99727 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
TIMP4Q99727 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TIMP4Q99727 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TIMP4Q99727 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.66■□□□□ 0.26
TIMP4Q99727 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TIMP4Q99727 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
TIMP4Q99727 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.65■□□□□ 0.26
TIMP4Q99727 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TIMP4Q99727 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms