Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CROCCP1-201ENST00000426910 5675 ntBASIC17.43■□□□□ 0.38
VMP1Q96GC9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 YBX1P2-201ENST00000489612 999 ntBASIC17.43■□□□□ 0.38
VMP1Q96GC9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 AC009053.2-201ENST00000563701 2365 ntBASIC17.43■□□□□ 0.38
VMP1Q96GC9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VMP1Q96GC9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VMP1Q96GC9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 RNF152P1-201ENST00000397754 604 ntBASIC17.42■□□□□ 0.38
VMP1Q96GC9 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 LINC01238-205ENST00000567549 1107 ntBASIC17.42■□□□□ 0.38
VMP1Q96GC9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 AL590326.2-201ENST00000625139 305 ntBASIC17.42■□□□□ 0.38
VMP1Q96GC9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 AL356309.3-201ENST00000624132 1934 ntBASIC17.42■□□□□ 0.38
VMP1Q96GC9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 AC012313.1-201ENST00000593393 3059 ntBASIC17.42■□□□□ 0.38
VMP1Q96GC9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VMP1Q96GC9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VMP1Q96GC9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 AL023973.1-201ENST00000624619 620 ntBASIC17.41■□□□□ 0.38
VMP1Q96GC9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms