Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 HOXB1-202ENST00000577092 1414 ntBASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 LETM1P2-201ENST00000597330 2178 ntBASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP4CQ96CF2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 AC034232.1-201ENST00000506026 1064 ntBASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 AC010240.3-201ENST00000607688 395 ntBASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4CQ96CF2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4CQ96CF2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 MIR3917-201ENST00000580971 93 ntBASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4CQ96CF2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4CQ96CF2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
CHMP4CQ96CF2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4CQ96CF2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.64■■□□□ 1.06
CHMP4CQ96CF2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms