Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS52Q8N1B4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS52Q8N1B4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS52Q8N1B4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 AC099336.1-202ENST00000602961 463 ntBASIC19.71■□□□□ 0.75
VPS52Q8N1B4 AC124864.1-201ENST00000623408 392 ntBASIC19.71■□□□□ 0.75
VPS52Q8N1B4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 AC068587.9-201ENST00000641814 219 ntBASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 LETM1P2-201ENST00000597330 2178 ntBASIC19.71■□□□□ 0.75
VPS52Q8N1B4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS52Q8N1B4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 GUSBP12-201ENST00000513727 720 ntBASIC19.7■□□□□ 0.74
VPS52Q8N1B4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 AL592071.1-201ENST00000611956 408 ntBASIC19.7■□□□□ 0.74
VPS52Q8N1B4 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.7■□□□□ 0.74
VPS52Q8N1B4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
VPS52Q8N1B4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 AL049812.1-201ENST00000432563 2267 ntBASIC19.69■□□□□ 0.74
VPS52Q8N1B4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.69■□□□□ 0.74
VPS52Q8N1B4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS52Q8N1B4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms