Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 DBET-201ENST00000630918 3363 ntBASIC15.21■□□□□ 0.02
CCDC28AQ8IWP9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 IRX1P1-201ENST00000438849 1838 ntBASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 FAM21FP-204ENST00000608637 956 ntBASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 AGGF1P2-201ENST00000426656 2106 ntBASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28AQ8IWP9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 SP2-202ENST00000613139 908 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC28AQ8IWP9 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms