Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 AC009947.1-201ENST00000444350 727 ntBASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 AC011467.2-201ENST00000598425 242 ntBASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 AC097374.2-201ENST00000618617 1306 ntBASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 AL024508.2-201ENST00000607749 1894 ntBASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 COX20P2-201ENST00000452636 358 ntBASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 NKAPP1-205ENST00000585790 367 ntBASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC88AQ3V6T2 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC88AQ3V6T2 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AC108751.1-201ENST00000490852 363 ntBASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 AL499627.1-201ENST00000569373 2188 ntBASIC22.14■■□□□ 1.13
CCDC88AQ3V6T2 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 AC079781.4-201ENST00000641908 219 ntBASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 FAM8A3P-201ENST00000427218 844 ntBASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 KRT18P2-201ENST00000447938 1258 ntBASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 AC018845.2-201ENST00000568326 409 ntBASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
CCDC88AQ3V6T2 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 KRT18P27-201ENST00000427733 1299 ntBASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 MIR1199-201ENST00000621445 119 ntBASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms