Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
CX3CL1P78423 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 AP000523.1-201ENST00000398242 1049 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.67□□□□□ -0.06
CX3CL1P78423 AC010203.1-204ENST00000548782 407 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.67□□□□□ -0.06
CX3CL1P78423 NEK4P2-201ENST00000580004 1012 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
CX3CL1P78423 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 AL138966.2-201ENST00000621997 464 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 AC141257.4-201ENST00000634557 245 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 AC136944.6-201ENST00000634818 245 ntBASIC14.67□□□□□ -0.06
CX3CL1P78423 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CX3CL1P78423 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 AC113347.1-201ENST00000413321 391 ntBASIC14.66□□□□□ -0.06
CX3CL1P78423 AL137013.1-201ENST00000432946 1228 ntBASIC14.66□□□□□ -0.06
CX3CL1P78423 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CL1P78423 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 AC139713.2-201ENST00000641328 2723 ntBASIC14.66□□□□□ -0.06
CX3CL1P78423 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 AC067852.2-201ENST00000590513 2313 ntBASIC14.66□□□□□ -0.06
CX3CL1P78423 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CX3CL1P78423 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CL1P78423 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CX3CL1P78423 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CL1P78423 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
CX3CL1P78423 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CX3CL1P78423 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms