Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.3■□□□□ 0.52
CCNFP41002 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.3■□□□□ 0.52
CCNFP41002 AP003041.3-201ENST00000527151 707 ntBASIC18.3■□□□□ 0.52
CCNFP41002 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.3■□□□□ 0.52
CCNFP41002 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.3■□□□□ 0.52
CCNFP41002 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.3■□□□□ 0.52
CCNFP41002 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CCNFP41002 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCNFP41002 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCNFP41002 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.3■□□□□ 0.52
CCNFP41002 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.3■□□□□ 0.52
CCNFP41002 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.3■□□□□ 0.52
CCNFP41002 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CCNFP41002 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCNFP41002 LINC01568-207ENST00000641790 1380 ntBASIC18.3■□□□□ 0.52
CCNFP41002 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 KRT18P22-201ENST00000402024 1347 ntBASIC18.29■□□□□ 0.52
CCNFP41002 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CCNFP41002 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CCNFP41002 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCNFP41002 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.29■□□□□ 0.52
CCNFP41002 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.29■□□□□ 0.52
CCNFP41002 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 GPAT2P1-201ENST00000444924 1672 ntBASIC18.28■□□□□ 0.52
CCNFP41002 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCNFP41002 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.28■□□□□ 0.52
CCNFP41002 AL512604.3-201ENST00000569583 964 ntBASIC18.28■□□□□ 0.52
CCNFP41002 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 AC145285.6-201ENST00000604632 637 ntBASIC18.28■□□□□ 0.52
CCNFP41002 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCNFP41002 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.28■□□□□ 0.52
CCNFP41002 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCNFP41002 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCNFP41002 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.27■□□□□ 0.52
CCNFP41002 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 AC034236.2-201ENST00000606662 1610 ntBASIC18.27■□□□□ 0.52
CCNFP41002 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CCNFP41002 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.27■□□□□ 0.52
CCNFP41002 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.27■□□□□ 0.52
CCNFP41002 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCNFP41002 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms