Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 AL391807.1-203ENST00000604392 2365 ntBASIC17.83■□□□□ 0.44
SHMT2P34897 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SHMT2P34897 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.83■□□□□ 0.44
SHMT2P34897 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SHMT2P34897 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHMT2P34897 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.83■□□□□ 0.44
SHMT2P34897 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SHMT2P34897 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.82■□□□□ 0.44
SHMT2P34897 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.82■□□□□ 0.44
SHMT2P34897 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.82■□□□□ 0.44
SHMT2P34897 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.82■□□□□ 0.44
SHMT2P34897 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.82■□□□□ 0.44
SHMT2P34897 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.82■□□□□ 0.44
SHMT2P34897 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.82■□□□□ 0.44
SHMT2P34897 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.82■□□□□ 0.44
SHMT2P34897 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHMT2P34897 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHMT2P34897 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHMT2P34897 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
SHMT2P34897 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
SHMT2P34897 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SHMT2P34897 HLA-F-220ENST00000434407 884 ntBASIC17.81■□□□□ 0.44
SHMT2P34897 VENTXP5-201ENST00000523979 775 ntBASIC17.81■□□□□ 0.44
SHMT2P34897 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.81■□□□□ 0.44
SHMT2P34897 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.81■□□□□ 0.44
SHMT2P34897 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.81■□□□□ 0.44
SHMT2P34897 AL136038.3-201ENST00000561909 1096 ntBASIC17.81■□□□□ 0.44
SHMT2P34897 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.81■□□□□ 0.44
SHMT2P34897 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.81■□□□□ 0.44
SHMT2P34897 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHMT2P34897 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.81■□□□□ 0.44
SHMT2P34897 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SHMT2P34897 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.8■□□□□ 0.44
SHMT2P34897 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.8■□□□□ 0.44
SHMT2P34897 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SHMT2P34897 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.8■□□□□ 0.44
SHMT2P34897 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 HCG11-201ENST00000411553 5696 ntBASIC17.8■□□□□ 0.44
SHMT2P34897 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHMT2P34897 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SHMT2P34897 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.79■□□□□ 0.44
SHMT2P34897 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms