Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 LINC01126-201ENST00000623515 1646 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 YBX2P1-201ENST00000394192 760 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 GGCT-205ENST00000409436 954 ntTSL 3 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 KRT18P65-201ENST00000439811 1286 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 DHDH-204ENST00000523250 634 ntTSL 5 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AC105339.3-201ENST00000560043 636 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 MIR3687-2-201ENST00000577708 61 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 MIR3687-1-201ENST00000614492 61 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 AP002414.3-201ENST00000589352 1468 ntBASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC24.04■■□□□ 1.44
CSB-PGBD3P0DP91 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 FIS1-203ENST00000442303 631 ntTSL 3 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 HS6ST1P1-201ENST00000481504 1234 ntBASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CSB-PGBD3P0DP91 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 SOD2-201ENST00000337404 991 ntTSL 2 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 IMP4-203ENST00000409935 958 ntTSL 5 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 AC007967.2-201ENST00000432613 625 ntBASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 AC112482.1-201ENST00000492080 688 ntBASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 UNC93B6-202ENST00000528242 690 ntBASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 AC040169.1-201ENST00000565382 521 ntBASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 HOTTIP_1.1-201ENST00000620415 57 ntBASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CSB-PGBD3P0DP91 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 AFG3L1P-217ENST00000557444 2447 ntBASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 AP001160.2-201ENST00000596071 487 ntBASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 AC107918.4-202ENST00000641623 219 ntBASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 AL499627.1-201ENST00000569373 2188 ntBASIC24.01■■□□□ 1.43
CSB-PGBD3P0DP91 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CSB-PGBD3P0DP91 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CSB-PGBD3P0DP91 PMS2P2-201ENST00000425039 1128 ntBASIC24■■□□□ 1.43
CSB-PGBD3P0DP91 HMGN1P19-201ENST00000436976 333 ntBASIC24■■□□□ 1.43
CSB-PGBD3P0DP91 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms