Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 FGFR3P6-201ENST00000457012 610 ntBASIC21.81■■□□□ 1.08
COL1A1P02452 AC093909.1-201ENST00000504731 1122 ntBASIC21.81■■□□□ 1.08
COL1A1P02452 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.8■■□□□ 1.08
COL1A1P02452 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.8■■□□□ 1.08
COL1A1P02452 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.8■■□□□ 1.08
COL1A1P02452 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.8■■□□□ 1.08
COL1A1P02452 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.8■■□□□ 1.08
COL1A1P02452 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.8■■□□□ 1.08
COL1A1P02452 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC21.8■■□□□ 1.08
COL1A1P02452 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.8■■□□□ 1.08
COL1A1P02452 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 WIZP1-201ENST00000531444 2299 ntBASIC21.8■■□□□ 1.08
COL1A1P02452 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.8■■□□□ 1.08
COL1A1P02452 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.8■■□□□ 1.08
COL1A1P02452 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL1A1P02452 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.79■■□□□ 1.08
COL1A1P02452 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.79■■□□□ 1.08
COL1A1P02452 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.79■■□□□ 1.08
COL1A1P02452 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL1A1P02452 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.79■■□□□ 1.08
COL1A1P02452 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
COL1A1P02452 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.79■■□□□ 1.08
COL1A1P02452 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.79■■□□□ 1.08
COL1A1P02452 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.79■■□□□ 1.08
COL1A1P02452 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.79■■□□□ 1.08
COL1A1P02452 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 TNXA-203ENST00000507684 2038 ntBASIC21.79■■□□□ 1.08
COL1A1P02452 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.79■■□□□ 1.08
COL1A1P02452 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL1A1P02452 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL1A1P02452 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL1A1P02452 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL1A1P02452 RBM17P3-201ENST00000417687 1192 ntBASIC21.78■■□□□ 1.08
COL1A1P02452 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL1A1P02452 AC073648.2-201ENST00000510116 352 ntBASIC21.78■■□□□ 1.08
COL1A1P02452 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.78■■□□□ 1.08
COL1A1P02452 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
COL1A1P02452 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
COL1A1P02452 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.78■■□□□ 1.08
COL1A1P02452 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL1A1P02452 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL1A1P02452 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL1A1P02452 MIR1233-2-201ENST00000408138 82 ntBASIC21.77■■□□□ 1.08
COL1A1P02452 MIR1233-1-201ENST00000408722 82 ntBASIC21.77■■□□□ 1.08
COL1A1P02452 AC132008.2-207ENST00000454517 770 ntBASIC21.77■■□□□ 1.08
COL1A1P02452 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.77■■□□□ 1.08
COL1A1P02452 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.77■■□□□ 1.08
COL1A1P02452 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.77■■□□□ 1.08
COL1A1P02452 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.77■■□□□ 1.08
COL1A1P02452 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.77■■□□□ 1.08
COL1A1P02452 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.77■■□□□ 1.08
COL1A1P02452 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.77■■□□□ 1.08
COL1A1P02452 AL355877.3-201ENST00000622820 899 ntBASIC21.77■■□□□ 1.08
COL1A1P02452 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.77■■□□□ 1.08
COL1A1P02452 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL1A1P02452 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms