Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.62■□□□□ 0.41
CLDN9O95484 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CLDN9O95484 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.61■□□□□ 0.41
CLDN9O95484 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.61■□□□□ 0.41
CLDN9O95484 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CLDN9O95484 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.61■□□□□ 0.41
CLDN9O95484 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.61■□□□□ 0.41
CLDN9O95484 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.61■□□□□ 0.41
CLDN9O95484 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.61■□□□□ 0.41
CLDN9O95484 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.61■□□□□ 0.41
CLDN9O95484 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.61■□□□□ 0.41
CLDN9O95484 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.61■□□□□ 0.41
CLDN9O95484 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 GNAS-203ENST00000306120 1878 ntBASIC17.61■□□□□ 0.41
CLDN9O95484 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLDN9O95484 AC134043.2-201ENST00000624206 2238 ntBASIC17.6■□□□□ 0.41
CLDN9O95484 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 AP000523.1-201ENST00000398242 1049 ntBASIC17.6■□□□□ 0.41
CLDN9O95484 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.6■□□□□ 0.41
CLDN9O95484 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.6■□□□□ 0.41
CLDN9O95484 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.6■□□□□ 0.41
CLDN9O95484 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.6■□□□□ 0.41
CLDN9O95484 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 AC092865.7-201ENST00000641832 219 ntBASIC17.6■□□□□ 0.41
CLDN9O95484 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLDN9O95484 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CLDN9O95484 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CLDN9O95484 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.6■□□□□ 0.41
CLDN9O95484 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.6■□□□□ 0.41
CLDN9O95484 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLDN9O95484 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CLDN9O95484 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 OR6D1P-202ENST00000641007 5290 ntBASIC17.59■□□□□ 0.41
CLDN9O95484 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 ECEL1P3-201ENST00000427961 737 ntBASIC17.59■□□□□ 0.41
CLDN9O95484 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.59■□□□□ 0.41
CLDN9O95484 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms