Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.66■■□□□ 1.06
MBD4O95243 AC074051.2-201ENST00000565115 352 ntBASIC21.66■■□□□ 1.06
MBD4O95243 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MBD4O95243 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.66■■□□□ 1.06
MBD4O95243 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MBD4O95243 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
MBD4O95243 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MBD4O95243 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.66■■□□□ 1.06
MBD4O95243 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MBD4O95243 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
MBD4O95243 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.66■■□□□ 1.06
MBD4O95243 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 KRT18P65-201ENST00000439811 1286 ntBASIC21.65■■□□□ 1.06
MBD4O95243 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.65■■□□□ 1.06
MBD4O95243 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.65■■□□□ 1.06
MBD4O95243 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.65■■□□□ 1.06
MBD4O95243 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.65■■□□□ 1.06
MBD4O95243 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.65■■□□□ 1.06
MBD4O95243 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 AL353801.3-201ENST00000609898 542 ntBASIC21.65■■□□□ 1.06
MBD4O95243 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.65■■□□□ 1.06
MBD4O95243 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.65■■□□□ 1.06
MBD4O95243 RNF165-205ENST00000588679 2904 ntBASIC21.65■■□□□ 1.06
MBD4O95243 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 AL096828.2-201ENST00000567259 1965 ntBASIC21.65■■□□□ 1.06
MBD4O95243 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.65■■□□□ 1.06
MBD4O95243 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MBD4O95243 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.64■■□□□ 1.06
MBD4O95243 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
MBD4O95243 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
MBD4O95243 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.64■■□□□ 1.05
MBD4O95243 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 AC012615.1-201ENST00000565797 1299 ntBASIC21.64■■□□□ 1.05
MBD4O95243 PRELID1P1-202ENST00000567272 903 ntBASIC21.64■■□□□ 1.05
MBD4O95243 AC011840.4-201ENST00000578471 627 ntBASIC21.64■■□□□ 1.05
MBD4O95243 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
MBD4O95243 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.64■■□□□ 1.05
MBD4O95243 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MBD4O95243 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.64■■□□□ 1.05
MBD4O95243 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
MBD4O95243 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.63■■□□□ 1.05
MBD4O95243 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.63■■□□□ 1.05
MBD4O95243 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
MBD4O95243 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 KRT17P6-201ENST00000453795 1220 ntBASIC21.63■■□□□ 1.05
MBD4O95243 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.63■■□□□ 1.05
MBD4O95243 AC104819.1-201ENST00000504587 486 ntBASIC21.63■■□□□ 1.05
MBD4O95243 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 Z69720.1-201ENST00000601483 472 ntBASIC21.63■■□□□ 1.05
MBD4O95243 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MBD4O95243 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.63■■□□□ 1.05
MBD4O95243 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.63■■□□□ 1.05
MBD4O95243 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
MBD4O95243 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
MBD4O95243 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms