Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CDKL5O76039 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDKL5O76039 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CDKL5O76039 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
CDKL5O76039 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CDKL5O76039 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 STARP1-201ENST00000397973 869 ntBASIC21.15■□□□□ 0.98
CDKL5O76039 AC117947.1-201ENST00000427448 529 ntBASIC21.15■□□□□ 0.98
CDKL5O76039 KRT18P57-201ENST00000443599 1254 ntBASIC21.15■□□□□ 0.98
CDKL5O76039 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.15■□□□□ 0.98
CDKL5O76039 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.15■□□□□ 0.98
CDKL5O76039 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.15■□□□□ 0.98
CDKL5O76039 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDKL5O76039 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.15■□□□□ 0.98
CDKL5O76039 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.15■□□□□ 0.98
CDKL5O76039 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.98
CDKL5O76039 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDKL5O76039 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.14■□□□□ 0.98
CDKL5O76039 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CDKL5O76039 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CDKL5O76039 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.14■□□□□ 0.97
CDKL5O76039 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.14■□□□□ 0.97
CDKL5O76039 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.14■□□□□ 0.97
CDKL5O76039 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CDKL5O76039 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
CDKL5O76039 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDKL5O76039 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.13■□□□□ 0.97
CDKL5O76039 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.13■□□□□ 0.97
CDKL5O76039 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.13■□□□□ 0.97
CDKL5O76039 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.13■□□□□ 0.97
CDKL5O76039 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.13■□□□□ 0.97
CDKL5O76039 AC018470.1-201ENST00000624790 3129 ntBASIC21.13■□□□□ 0.97
CDKL5O76039 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.13■□□□□ 0.97
CDKL5O76039 RNF152P1-201ENST00000397754 604 ntBASIC21.13■□□□□ 0.97
CDKL5O76039 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.13■□□□□ 0.97
CDKL5O76039 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.13■□□□□ 0.97
CDKL5O76039 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.13■□□□□ 0.97
CDKL5O76039 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.13■□□□□ 0.97
CDKL5O76039 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.13■□□□□ 0.97
CDKL5O76039 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDKL5O76039 AC008764.6-201ENST00000595909 2069 ntBASIC21.13■□□□□ 0.97
CDKL5O76039 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms