Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.22■□□□□ 0.51
SHOX2O60902 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.22■□□□□ 0.51
SHOX2O60902 AL121906.2-201ENST00000621597 723 ntBASIC18.22■□□□□ 0.51
SHOX2O60902 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 KRT8P41-201ENST00000533985 1514 ntBASIC18.22■□□□□ 0.51
SHOX2O60902 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.22■□□□□ 0.51
SHOX2O60902 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.21■□□□□ 0.51
SHOX2O60902 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 LINC00304-203ENST00000565008 1864 ntBASIC18.21■□□□□ 0.51
SHOX2O60902 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.21■□□□□ 0.51
SHOX2O60902 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 AC069236.1-201ENST00000604339 616 ntBASIC18.21■□□□□ 0.51
SHOX2O60902 AL121832.2-201ENST00000610979 668 ntBASIC18.21■□□□□ 0.51
SHOX2O60902 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 AC010980.2-201ENST00000587099 1412 ntBASIC18.21■□□□□ 0.51
SHOX2O60902 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
SHOX2O60902 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 AC006449.5-201ENST00000610658 2098 ntBASIC18.21■□□□□ 0.51
SHOX2O60902 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOX2O60902 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHOX2O60902 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHOX2O60902 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHOX2O60902 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.21■□□□□ 0.5
SHOX2O60902 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.2■□□□□ 0.5
SHOX2O60902 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.2■□□□□ 0.5
SHOX2O60902 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SHOX2O60902 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.2■□□□□ 0.5
SHOX2O60902 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SHOX2O60902 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SHOX2O60902 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SHOX2O60902 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOX2O60902 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SHOX2O60902 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.19■□□□□ 0.5
SHOX2O60902 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.19■□□□□ 0.5
SHOX2O60902 AC006015.1-201ENST00000429970 570 ntBASIC18.19■□□□□ 0.5
SHOX2O60902 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.19■□□□□ 0.5
SHOX2O60902 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.19■□□□□ 0.5
SHOX2O60902 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 AC008694.1-202ENST00000636953 945 ntBASIC18.19■□□□□ 0.5
SHOX2O60902 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.19■□□□□ 0.5
SHOX2O60902 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOX2O60902 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHOX2O60902 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms