Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 AC073130.3-201ENST00000624389 2278 ntBASIC31.36■■■□□ 2.61
CCDC88BA6NC98 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88BA6NC98 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 AL355385.1-201ENST00000606123 409 ntBASIC31.35■■■□□ 2.61
CCDC88BA6NC98 AC134684.3-201ENST00000641758 218 ntBASIC31.35■■■□□ 2.61
CCDC88BA6NC98 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC88BA6NC98 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 DNAJB3-201ENST00000446806 729 ntBASIC31.34■■■□□ 2.61
CCDC88BA6NC98 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 AC122714.2-201ENST00000502787 707 ntBASIC31.34■■■□□ 2.61
CCDC88BA6NC98 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 AL022326.1-202ENST00000641533 845 ntBASIC31.34■■■□□ 2.61
CCDC88BA6NC98 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC88BA6NC98 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 AC002347.1-201ENST00000569543 541 ntBASIC31.33■■■□□ 2.61
CCDC88BA6NC98 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 SPDYE21P-201ENST00000413323 827 ntBASIC31.33■■■□□ 2.61
CCDC88BA6NC98 MSRA-206ENST00000521209 814 ntTSL 3 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 COPE-211ENST00000600932 1144 ntTSL 5 BASIC31.33■■■□□ 2.61
CCDC88BA6NC98 AC064836.3-201ENST00000607928 673 ntBASIC31.33■■■□□ 2.61
CCDC88BA6NC98 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.61
CCDC88BA6NC98 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC31.32■■■□□ 2.61
CCDC88BA6NC98 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 AC023274.1-201ENST00000418278 595 ntBASIC31.32■■■□□ 2.6
CCDC88BA6NC98 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC88BA6NC98 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 AC004817.3-201ENST00000602957 2129 ntBASIC31.31■■■□□ 2.6
CCDC88BA6NC98 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88BA6NC98 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 DNAJB3-202ENST00000449667 1266 ntBASIC31.3■■■□□ 2.6
CCDC88BA6NC98 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 AC027796.2-201ENST00000575326 344 ntBASIC31.3■■■□□ 2.6
CCDC88BA6NC98 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC31.3■■■□□ 2.6
CCDC88BA6NC98 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms