Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 RNF126P1-202ENST00000569893 925 ntBASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 GMCL1P1-201ENST00000463439 1581 ntBASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM39Q9HCM9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 AC005332.3-201ENST00000589904 676 ntBASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM39Q9HCM9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 LINC01126-201ENST00000623515 1646 ntBASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 IGHGP-201ENST00000390555 1178 ntBASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 UPK3BP1-201ENST00000428678 509 ntBASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 AC113404.2-201ENST00000507884 177 ntBASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms