Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC018445.3-201ENST00000624177 1945 ntBASIC23.71■■□□□ 1.39
RTF1Q92541 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC23.71■■□□□ 1.39
RTF1Q92541 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
RTF1Q92541 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.71■■□□□ 1.39
RTF1Q92541 BET1L-206ENST00000486280 665 ntTSL 3 BASIC23.71■■□□□ 1.39
RTF1Q92541 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
RTF1Q92541 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23.71■■□□□ 1.39
RTF1Q92541 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.71■■□□□ 1.39
RTF1Q92541 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.71■■□□□ 1.39
RTF1Q92541 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
RTF1Q92541 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC23.7■■□□□ 1.39
RTF1Q92541 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
RTF1Q92541 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.7■■□□□ 1.38
RTF1Q92541 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
RTF1Q92541 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.7■■□□□ 1.38
RTF1Q92541 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
RTF1Q92541 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC23.7■■□□□ 1.38
RTF1Q92541 ESPNP-201ENST00000270691 2015 ntBASIC23.7■■□□□ 1.38
RTF1Q92541 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTF1Q92541 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.69■■□□□ 1.38
RTF1Q92541 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 AC073592.3-201ENST00000625118 1834 ntBASIC23.69■■□□□ 1.38
RTF1Q92541 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
RTF1Q92541 AC026396.1-201ENST00000419388 421 ntBASIC23.69■■□□□ 1.38
RTF1Q92541 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC23.69■■□□□ 1.38
RTF1Q92541 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.69■■□□□ 1.38
RTF1Q92541 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC23.69■■□□□ 1.38
RTF1Q92541 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC23.69■■□□□ 1.38
RTF1Q92541 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC23.69■■□□□ 1.38
RTF1Q92541 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
RTF1Q92541 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RTF1Q92541 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 BX323043.1-201ENST00000641006 1765 ntBASIC23.68■■□□□ 1.38
RTF1Q92541 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
RTF1Q92541 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 FICD-205ENST00000552758 603 ntTSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.68■■□□□ 1.38
RTF1Q92541 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.68■■□□□ 1.38
RTF1Q92541 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.68■■□□□ 1.38
RTF1Q92541 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC23.68■■□□□ 1.38
RTF1Q92541 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.68■■□□□ 1.38
RTF1Q92541 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTF1Q92541 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.67■■□□□ 1.38
RTF1Q92541 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC23.67■■□□□ 1.38
RTF1Q92541 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.67■■□□□ 1.38
RTF1Q92541 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
RTF1Q92541 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.67■■□□□ 1.38
RTF1Q92541 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTF1Q92541 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms