Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 AC138907.5-202ENST00000569484 235 ntBASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28AQ8IWP9 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 AC024909.3-201ENST00000611513 2257 ntBASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 YBX1P1-201ENST00000445822 960 ntBASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28AQ8IWP9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC28AQ8IWP9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms