Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC009065.1-201ENST00000564055 1225 ntBASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 PHGDH-209ENST00000641074 1780 ntBASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 AL596275.1-201ENST00000423464 877 ntBASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 ECEL1P2-202ENST00000465689 757 ntBASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC40Q4G0X9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 AC009947.2-201ENST00000444014 672 ntBASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 AC008764.6-201ENST00000595909 2069 ntBASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC40Q4G0X9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC40Q4G0X9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms