Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 AC005498.2-205ENST00000593218 784 ntBASIC19.22■□□□□ 0.67
CHD9Q3L8U1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHD9Q3L8U1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CHD9Q3L8U1 AC097374.2-201ENST00000618617 1306 ntBASIC19.2■□□□□ 0.66
CHD9Q3L8U1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 AC007967.3-201ENST00000434308 558 ntBASIC19.2■□□□□ 0.66
CHD9Q3L8U1 BX005266.1-201ENST00000473402 457 ntBASIC19.2■□□□□ 0.66
CHD9Q3L8U1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.2■□□□□ 0.66
CHD9Q3L8U1 GPR89P-201ENST00000407924 1495 ntBASIC19.2■□□□□ 0.66
CHD9Q3L8U1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 MTCL1P1-201ENST00000446207 792 ntBASIC19.19■□□□□ 0.66
CHD9Q3L8U1 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 AC011467.4-201ENST00000594891 528 ntBASIC19.19■□□□□ 0.66
CHD9Q3L8U1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 Z92544.3-201ENST00000624747 417 ntBASIC19.19■□□□□ 0.66
CHD9Q3L8U1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.19■□□□□ 0.66
CHD9Q3L8U1 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHD9Q3L8U1 AFG3L1P-217ENST00000557444 2447 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms