Protein–RNA interactions for Protein: Q15878

CACNA1E, Voltage-dependent R-type calcium channel subunit alpha-1E, humanhuman

Predictions only

Length 2,313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1EQ15878 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
CACNA1EQ15878 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.68■□□□□ 0.42
CACNA1EQ15878 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CACNA1EQ15878 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1EQ15878 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1EQ15878 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 DNAJB3-201ENST00000446806 729 ntBASIC17.67■□□□□ 0.42
CACNA1EQ15878 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 AC120498.9-201ENST00000339021 3867 ntBASIC17.67■□□□□ 0.42
CACNA1EQ15878 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 LAGE3P1-201ENST00000425356 484 ntBASIC17.67■□□□□ 0.42
CACNA1EQ15878 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 NKAPP1-205ENST00000585790 367 ntBASIC17.67■□□□□ 0.42
CACNA1EQ15878 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1EQ15878 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CACNA1EQ15878 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 SIGLEC16-201ENST00000599858 1437 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC002347.1-201ENST00000569543 541 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC107918.4-202ENST00000641623 219 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 MYLKP1-201ENST00000509077 1580 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC096633.1-201ENST00000422446 749 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC009533.2-201ENST00000543664 586 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CACNA1EQ15878 LINC00602-201ENST00000629776 2065 ntBASIC17.66■□□□□ 0.42
CACNA1EQ15878 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.66■□□□□ 0.42
CACNA1EQ15878 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 KRT18P27-201ENST00000427733 1299 ntBASIC17.65■□□□□ 0.42
CACNA1EQ15878 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.65■□□□□ 0.42
CACNA1EQ15878 AC112698.1-201ENST00000510299 916 ntBASIC17.65■□□□□ 0.42
CACNA1EQ15878 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.65■□□□□ 0.42
CACNA1EQ15878 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.65■□□□□ 0.42
CACNA1EQ15878 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.65■□□□□ 0.42
CACNA1EQ15878 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CACNA1EQ15878 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms