Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CKS1BP61024 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CKS1BP61024 GOLGA6L3-201ENST00000507199 1679 ntBASIC12.77□□□□□ -0.36
CKS1BP61024 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
CKS1BP61024 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CKS1BP61024 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 BX276092.2-201ENST00000417668 665 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 AC073210.2-201ENST00000430369 194 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 YBX1P10-201ENST00000444752 975 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC12.77□□□□□ -0.37
CKS1BP61024 PHB2-213ENST00000546111 858 ntTSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC12.77□□□□□ -0.37
CKS1BP61024 AC005829.2-201ENST00000571422 1056 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC12.77□□□□□ -0.37
CKS1BP61024 AL121906.2-201ENST00000621597 723 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC12.77□□□□□ -0.37
CKS1BP61024 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC12.77□□□□□ -0.37
CKS1BP61024 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CKS1BP61024 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC12.77□□□□□ -0.37
CKS1BP61024 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CKS1BP61024 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.77□□□□□ -0.37
CKS1BP61024 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 AD000864.1-201ENST00000624076 2295 ntBASIC12.77□□□□□ -0.37
CKS1BP61024 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CKS1BP61024 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CKS1BP61024 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 AL031598.1-201ENST00000561511 1773 ntBASIC12.76□□□□□ -0.37
CKS1BP61024 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 AC133552.2-202ENST00000575694 574 ntBASIC12.76□□□□□ -0.37
CKS1BP61024 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC12.76□□□□□ -0.37
CKS1BP61024 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CKS1BP61024 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 AC093525.10-201ENST00000625130 1569 ntBASIC12.76□□□□□ -0.37
CKS1BP61024 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 AC104417.2-201ENST00000562989 1793 ntBASIC12.76□□□□□ -0.37
CKS1BP61024 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC12.76□□□□□ -0.37
CKS1BP61024 SDHAP1-207ENST00000440850 2000 ntBASIC12.76□□□□□ -0.37
CKS1BP61024 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.76□□□□□ -0.37
CKS1BP61024 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CKS1BP61024 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CKS1BP61024 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CKS1BP61024 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.75□□□□□ -0.37
CKS1BP61024 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.75□□□□□ -0.37
CKS1BP61024 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CKS1BP61024 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CKS1BP61024 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms