Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
FOXA3P55318 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA3P55318 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
FOXA3P55318 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
FOXA3P55318 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 STK4-201ENST00000372801 2038 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
FOXA3P55318 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.69□□□□□ -0.22
FOXA3P55318 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.69□□□□□ -0.22
FOXA3P55318 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 MFF-205ENST00000354503 1085 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 ZNRF2P3-201ENST00000424200 374 ntBASIC13.69□□□□□ -0.22
FOXA3P55318 AC007322.1-201ENST00000426983 750 ntBASIC13.69□□□□□ -0.22
FOXA3P55318 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC13.69□□□□□ -0.22
FOXA3P55318 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC13.69□□□□□ -0.22
FOXA3P55318 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA3P55318 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.69□□□□□ -0.22
FOXA3P55318 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA3P55318 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA3P55318 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.69□□□□□ -0.22
FOXA3P55318 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA3P55318 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 AP001094.4-201ENST00000579008 2176 ntBASIC13.68□□□□□ -0.22
FOXA3P55318 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 KRT8P3-201ENST00000519669 1449 ntBASIC13.68□□□□□ -0.22
FOXA3P55318 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 KRT18P41-201ENST00000518924 1277 ntBASIC13.68□□□□□ -0.22
FOXA3P55318 PLD4-205ENST00000553861 667 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 PNN-205ENST00000556530 601 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 AL096828.2-201ENST00000567259 1965 ntBASIC13.68□□□□□ -0.22
FOXA3P55318 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms