Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 SPDYE15P-201ENST00000424157 909 ntBASIC18.79■□□□□ 0.6
NEK3P51956 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 AC112907.2-201ENST00000448639 330 ntBASIC18.79■□□□□ 0.6
NEK3P51956 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
NEK3P51956 AC091076.1-201ENST00000610741 619 ntBASIC18.79■□□□□ 0.6
NEK3P51956 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 AC112497.1-201ENST00000624824 639 ntBASIC18.79■□□□□ 0.6
NEK3P51956 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NEK3P51956 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 HEIH-201ENST00000623091 1652 ntBASIC18.79■□□□□ 0.6
NEK3P51956 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.79■□□□□ 0.6
NEK3P51956 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.79■□□□□ 0.6
NEK3P51956 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.78■□□□□ 0.6
NEK3P51956 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.78■□□□□ 0.6
NEK3P51956 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.78■□□□□ 0.6
NEK3P51956 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.78■□□□□ 0.6
NEK3P51956 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 AC106820.2-201ENST00000563775 3264 ntBASIC18.78■□□□□ 0.6
NEK3P51956 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.78■□□□□ 0.6
NEK3P51956 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.78■□□□□ 0.6
NEK3P51956 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.78■□□□□ 0.6
NEK3P51956 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.78■□□□□ 0.6
NEK3P51956 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.78■□□□□ 0.6
NEK3P51956 AL358472.4-201ENST00000633140 710 ntBASIC18.78■□□□□ 0.6
NEK3P51956 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NEK3P51956 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NEK3P51956 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 AC012313.1-201ENST00000593393 3059 ntBASIC18.77■□□□□ 0.6
NEK3P51956 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
NEK3P51956 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.77■□□□□ 0.6
NEK3P51956 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.77■□□□□ 0.6
NEK3P51956 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.77■□□□□ 0.6
NEK3P51956 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.77■□□□□ 0.6
NEK3P51956 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.77■□□□□ 0.6
NEK3P51956 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.77■□□□□ 0.6
NEK3P51956 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.77■□□□□ 0.6
NEK3P51956 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.77■□□□□ 0.6
NEK3P51956 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
NEK3P51956 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NEK3P51956 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms