Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 AC083849.1-201ENST00000615227 514 ntBASIC18.93■□□□□ 0.62
PTPN9P43378 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.93■□□□□ 0.62
PTPN9P43378 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PTPN9P43378 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.93■□□□□ 0.62
PTPN9P43378 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 AC007613.1-201ENST00000572811 2597 ntBASIC18.92■□□□□ 0.62
PTPN9P43378 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN9P43378 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.92■□□□□ 0.62
PTPN9P43378 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN9P43378 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN9P43378 SLC25A6P5-201ENST00000435663 894 ntBASIC18.92■□□□□ 0.62
PTPN9P43378 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 SPDYE13P-201ENST00000445314 798 ntBASIC18.92■□□□□ 0.62
PTPN9P43378 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN9P43378 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN9P43378 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN9P43378 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN9P43378 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.92■□□□□ 0.62
PTPN9P43378 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN9P43378 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.92■□□□□ 0.62
PTPN9P43378 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PTPN9P43378 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN9P43378 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.91■□□□□ 0.62
PTPN9P43378 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PTPN9P43378 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PTPN9P43378 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PTPN9P43378 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 AL671277.2-201ENST00000458060 996 ntBASIC18.91■□□□□ 0.62
PTPN9P43378 VENTXP5-201ENST00000523979 775 ntBASIC18.91■□□□□ 0.62
PTPN9P43378 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.91■□□□□ 0.62
PTPN9P43378 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
PTPN9P43378 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
PTPN9P43378 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.91■□□□□ 0.62
PTPN9P43378 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN9P43378 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN9P43378 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN9P43378 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
PTPN9P43378 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN9P43378 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN9P43378 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
PTPN9P43378 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN9P43378 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN9P43378 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN9P43378 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN9P43378 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.9■□□□□ 0.62
PTPN9P43378 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms