Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MAT2B-205ENST00000519719 572 ntTSL 29.56□□□□□ -0.882e-6■■□□□ 13.1
YBX3P16989 DCTN3-210ENST00000479399 3023 ntTSL 1 (best)8.59□□□□□ -1.044e-8■■□□□ 13.1
YBX3P16989 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.77□□□□□ -1.332e-6■■□□□ 13.1
YBX3P16989 EPHB4-208ENST00000492403 812 ntTSL 213.2□□□□□ -0.32e-8■■□□□ 13.1
YBX3P16989 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.954e-7■■□□□ 13
YBX3P16989 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.584e-7■■□□□ 13
YBX3P16989 NUDT21-204ENST00000566340 581 ntTSL 37.14□□□□□ -1.277e-12■■□□□ 13
YBX3P16989 ARHGEF2-212ENST00000474428 742 ntTSL 315.7■□□□□ 0.13e-8■■□□□ 13
YBX3P16989 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.553e-6■■□□□ 13
YBX3P16989 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.53e-6■■□□□ 13
YBX3P16989 LTA4H-201ENST00000228740 2139 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.53e-6■■□□□ 13
YBX3P16989 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC8.63□□□□□ -1.033e-6■■□□□ 13
YBX3P16989 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.21□□□□□ -1.413e-6■■□□□ 13
YBX3P16989 LTA4H-210ENST00000553041 6109 ntTSL 24.87□□□□□ -1.633e-6■■□□□ 13
YBX3P16989 YBX3-213ENST00000542641 669 ntTSL 414.33□□□□□ -0.126e-7■■□□□ 13
YBX3P16989 PIGT-231ENST00000638927 1457 ntTSL 515.72■□□□□ 0.119e-8■■□□□ 13
YBX3P16989 PIGT-249ENST00000639872 1498 ntTSL 211.72□□□□□ -0.539e-8■■□□□ 13
YBX3P16989 YBX3-217ENST00000546164 805 ntTSL 215.47■□□□□ 0.071e-6■■□□□ 13
YBX3P16989 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.572e-7■■□□□ 13
YBX3P16989 MRPL4-211ENST00000592514 1118 ntAPPRIS ALT2 TSL 530.86■■■□□ 2.532e-7■■□□□ 13
YBX3P16989 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC26.04■■□□□ 1.762e-7■■□□□ 13
YBX3P16989 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.51■■□□□ 1.352e-7■■□□□ 13
YBX3P16989 KIF2A-207ENST00000509663 759 ntTSL 325.88■■□□□ 1.735e-7■■□□□ 13
YBX3P16989 SRSF11-208ENST00000463859 1035 ntTSL 59.12□□□□□ -0.954e-9■■□□□ 13
YBX3P16989 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.66■■□□□ 1.867e-7■■□□□ 13
YBX3P16989 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.76■■□□□ 1.717e-7■■□□□ 13
YBX3P16989 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.77■■□□□ 1.47e-7■■□□□ 13
YBX3P16989 TAF6-202ENST00000417349 537 ntTSL 422.76■■□□□ 1.232e-7■■□□□ 13
YBX3P16989 PRKCA-203ENST00000578063 1733 ntTSL 1 (best)21.68■■□□□ 1.062e-7■■□□□ 13
YBX3P16989 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.017e-7■■□□□ 13
YBX3P16989 SCAF1-203ENST00000598359 662 ntAPPRIS ALT2 TSL 318.43■□□□□ 0.542e-7■■□□□ 13
YBX3P16989 AIP-202ENST00000525341 635 ntTSL 218.14■□□□□ 0.492e-7■■□□□ 13
YBX3P16989 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.487e-7■■□□□ 13
YBX3P16989 TRIM25-207ENST00000573108 952 ntTSL 316.8■□□□□ 0.282e-7■■□□□ 13
YBX3P16989 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.282e-7■■□□□ 13
YBX3P16989 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.072e-7■■□□□ 13
YBX3P16989 SELENOF-205ENST00000469566 831 ntTSL 212.83□□□□□ -0.367e-7■■□□□ 13
YBX3P16989 PRKCA-201ENST00000284384 2718 ntTSL 58.6□□□□□ -1.032e-7■■□□□ 13
YBX3P16989 SELENOF-206ENST00000497861 266 ntTSL 33.83□□□□□ -1.87e-7■■□□□ 13
YBX3P16989 CCT3-205ENST00000368261 863 ntTSL 512.95□□□□□ -0.341e-11■■□□□ 13
YBX3P16989 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.151e-7■■□□□ 13
YBX3P16989 SNX6-205ENST00000555648 467 ntTSL 320.7■□□□□ 0.95e-10■■□□□ 13
YBX3P16989 SNX6-210ENST00000557341 559 ntTSL 519.15■□□□□ 0.665e-10■■□□□ 13
YBX3P16989 SNX6-203ENST00000555416 1215 ntTSL 1 (best)17.97■□□□□ 0.475e-10■■□□□ 13
YBX3P16989 SNX6-206ENST00000556162 1855 ntTSL 217.71■□□□□ 0.435e-10■■□□□ 13
YBX3P16989 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.39■□□□□ 0.375e-10■■□□□ 13
YBX3P16989 SNX6-209ENST00000557265 725 ntTSL 317.33■□□□□ 0.365e-10■■□□□ 13
YBX3P16989 SNX6-207ENST00000556303 539 ntTSL 216.8■□□□□ 0.285e-10■■□□□ 13
YBX3P16989 SNX6-208ENST00000556712 851 ntTSL 513.61□□□□□ -0.235e-10■■□□□ 13
YBX3P16989 SNX6-201ENST00000362031 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.295e-10■■□□□ 13
YBX3P16989 AGO3-207ENST00000634486 3599 ntTSL 516.28■□□□□ 0.22e-7■■□□□ 13
YBX3P16989 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.34□□□□□ -0.112e-7■■□□□ 13
YBX3P16989 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.542e-7■■□□□ 13
YBX3P16989 MICU1-205ENST00000476605 1933 ntTSL 211.3□□□□□ -0.65e-7■■□□□ 13
YBX3P16989 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.023e-6■■□□□ 13
YBX3P16989 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.56□□□□□ -1.23e-6■■□□□ 13
YBX3P16989 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.01■□□□□ 0.315e-6■■□□□ 13
YBX3P16989 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC16.45■□□□□ 0.225e-6■■□□□ 13
YBX3P16989 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.455e-6■■□□□ 13
YBX3P16989 RFC3-201ENST00000380071 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.424e-7■■□□□ 13
YBX3P16989 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.67□□□□□ -1.344e-7■■□□□ 13
YBX3P16989 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.622e-6■■□□□ 13
YBX3P16989 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.3■□□□□ 0.24e-10■■□□□ 13
YBX3P16989 PSMD1-202ENST00000373635 3230 ntTSL 5 BASIC12.81□□□□□ -0.361e-6■■□□□ 13
YBX3P16989 PSMD1-201ENST00000308696 3326 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.451e-6■■□□□ 13
YBX3P16989 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5□□□□□ -1.611e-6■■□□□ 13
YBX3P16989 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.139e-9■■□□□ 13
YBX3P16989 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.561e-13■■□□□ 13
YBX3P16989 FXYD5-204ENST00000392219 872 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.21e-13■■□□□ 13
YBX3P16989 FXYD5-205ENST00000423817 892 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.281e-13■■□□□ 13
YBX3P16989 FXYD5-210ENST00000588699 927 ntTSL 5 BASIC12.36□□□□□ -0.431e-13■■□□□ 13
YBX3P16989 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC11.08□□□□□ -0.641e-13■■□□□ 13
YBX3P16989 FXYD5-211ENST00000590686 862 ntAPPRIS P2 TSL 3 BASIC11□□□□□ -0.651e-13■■□□□ 13
YBX3P16989 FXYD5-213ENST00000592290 883 ntTSL 39.81□□□□□ -0.841e-13■■□□□ 13
YBX3P16989 KEAP1-207ENST00000591039 960 ntTSL 331.67■■■□□ 2.662e-7■■□□□ 13
YBX3P16989 KEAP1-208ENST00000591419 986 ntTSL 330■■■□□ 2.392e-7■■□□□ 13
YBX3P16989 TBC1D14-205ENST00000444368 663 ntTSL 327.9■■■□□ 2.067e-7■■□□□ 13
YBX3P16989 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.84■■□□□ 1.892e-7■■□□□ 13
YBX3P16989 INTS11-223ENST00000498173 1589 ntTSL 226.54■■□□□ 1.842e-7■■□□□ 13
YBX3P16989 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.832e-7■■□□□ 13
YBX3P16989 INTS11-220ENST00000493534 896 ntTSL 325.85■■□□□ 1.732e-7■■□□□ 13
YBX3P16989 INTS11-215ENST00000470679 584 ntTSL 525.76■■□□□ 1.712e-7■■□□□ 13
YBX3P16989 GATA2-206ENST00000498200 563 ntTSL 225.58■■□□□ 1.691e-8■■□□□ 13
YBX3P16989 INTS11-230ENST00000526332 579 ntTSL 424.08■■□□□ 1.452e-7■■□□□ 13
YBX3P16989 INTS11-224ENST00000498476 554 ntTSL 424.08■■□□□ 1.452e-7■■□□□ 13
YBX3P16989 INTS11-239ENST00000531019 549 ntTSL 424.08■■□□□ 1.452e-7■■□□□ 13
YBX3P16989 INTS11-235ENST00000527719 750 ntTSL 523.89■■□□□ 1.412e-7■■□□□ 13
YBX3P16989 INTS11-219ENST00000490853 704 ntTSL 323.78■■□□□ 1.42e-7■■□□□ 13
YBX3P16989 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.52■■□□□ 1.362e-7■■□□□ 13
YBX3P16989 INTS11-207ENST00000434694 1056 ntTSL 522.82■■□□□ 1.242e-7■■□□□ 13
YBX3P16989 INTS11-206ENST00000430786 849 ntTSL 522.36■■□□□ 1.172e-7■■□□□ 13
YBX3P16989 INTS11-218ENST00000488042 1134 ntTSL 222.33■■□□□ 1.172e-7■■□□□ 13
YBX3P16989 INTS11-232ENST00000526904 551 ntTSL 422.09■■□□□ 1.132e-7■■□□□ 13
YBX3P16989 INTS11-237ENST00000530031 800 ntTSL 521.87■■□□□ 1.092e-7■■□□□ 13
YBX3P16989 INTS11-236ENST00000528879 1524 ntTSL 520.35■□□□□ 0.852e-7■■□□□ 13
YBX3P16989 INTS11-221ENST00000496353 2428 ntTSL 219.9■□□□□ 0.782e-7■■□□□ 13
YBX3P16989 INTS11-227ENST00000525603 738 ntTSL 319.73■□□□□ 0.752e-7■■□□□ 13
YBX3P16989 INTS11-244ENST00000532952 773 ntTSL 318.91■□□□□ 0.622e-7■■□□□ 13
YBX3P16989 INTS11-231ENST00000526797 659 ntTSL 418.34■□□□□ 0.532e-7■■□□□ 13
YBX3P16989 INTS11-229ENST00000526113 591 ntTSL 517.97■□□□□ 0.472e-7■■□□□ 13
Retrieved 100 of 29,075 protein–RNA pairs in 235.2 ms