RNA–Protein interactions for RNA: ENST00000290650.8

UBR1-201, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR1, Length 7,761 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-201ENST00000290650 DCAF8L2P0C7V8 631 aa8.64□□□□□ -1.03
UBR1-201ENST00000290650 NISCHQ9Y2I1 1504 aa8.62□□□□□ -1.03
UBR1-201ENST00000290650 SHROOM4Q9ULL8 1493 aa8.37□□□□□ -1.07
UBR1-201ENST00000290650 SUPT5HO00267 1087 aaKnown RBP8.32□□□□□ -1.08
UBR1-201ENST00000290650 EHMT2Q96KQ7 1210 aa8.16□□□□□ -1.1
UBR1-201ENST00000290650 FAM9AQ8IZU1 332 aaPredicted RBP7.86□□□□□ -1.15
UBR1-201ENST00000290650 TTBK1Q5TCY1 1321 aaPredicted RBP7.84□□□□□ -1.15
UBR1-201ENST00000290650 PCGF6Q9BYE7 350 aa7.77□□□□□ -1.16
UBR1-201ENST00000290650 RANGAP1P46060 587 aaPredicted RBP7.69□□□□□ -1.18
UBR1-201ENST00000290650 PPARGC1BQ86YN6 1023 aaKnown RBP7.68□□□□□ -1.18
UBR1-201ENST00000290650 LOC105371045A0A1W2PR82 267 aa7.6□□□□□ -1.19
UBR1-201ENST00000290650 TRIM41Q8WV44 630 aa7.58□□□□□ -1.2
UBR1-201ENST00000290650 CHIC1Q5VXU3 224 aa7.47□□□□□ -1.21
UBR1-201ENST00000290650 UBTFP17480 764 aaKnown RBP7.44□□□□□ -1.22
UBR1-201ENST00000290650 APLP2Q06481 763 aa7.44□□□□□ -1.22
UBR1-201ENST00000290650 ATP1B4Q9UN42 357 aaPredicted RBP7.44□□□□□ -1.22
UBR1-201ENST00000290650 CCER1Q8TC90 406 aaPredicted RBP7.43□□□□□ -1.22
UBR1-201ENST00000290650 HRCP23327 699 aa7.42□□□□□ -1.22
UBR1-201ENST00000290650 ABCC9O60706 1549 aa7.4□□□□□ -1.23
UBR1-201ENST00000290650 YTHDC1Q96MU7 727 aaKnown RBP7.37□□□□□ -1.23
UBR1-201ENST00000290650 PABPN1Q86U42 306 aaKnown RBP eCLIP7.35□□□□□ -1.23
UBR1-201ENST00000290650 TRIM26Q12899 539 aaPredicted RBP7.31□□□□□ -1.24
UBR1-201ENST00000290650 ITGAEP38570 1179 aa7.31□□□□□ -1.24
UBR1-201ENST00000290650 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.29□□□□□ -1.24
UBR1-201ENST00000290650 HNRNPUL2Q1KMD3 747 aaKnown RBP7.27□□□□□ -1.24
UBR1-201ENST00000290650 SCRIBQ14160 1630 aa7.24□□□□□ -1.25
UBR1-201ENST00000290650 ZEB1P37275 1124 aaPredicted RBP7.21□□□□□ -1.26
UBR1-201ENST00000290650 MYT1Q01538 1121 aa7.21□□□□□ -1.26
UBR1-201ENST00000290650 MYO15BQ96JP2 1530 aa7.19□□□□□ -1.26
UBR1-201ENST00000290650 CNGB1Q14028 1251 aaPredicted RBP7.19□□□□□ -1.26
UBR1-201ENST00000290650 ZCCHC6Q5VYS8 1495 aaKnown RBP7.16□□□□□ -1.26
UBR1-201ENST00000290650 CENPBP07199 599 aaPredicted RBP7.15□□□□□ -1.27
UBR1-201ENST00000290650 PELP1Q8IZL8 1130 aaKnown RBP7.09□□□□□ -1.27
UBR1-201ENST00000290650 POLR3GLQ9BT43 218 aa7.09□□□□□ -1.27
UBR1-201ENST00000290650 P3H3Q8IVL6 736 aa7.06□□□□□ -1.28
UBR1-201ENST00000290650 DIEXFQ68CQ4 756 aaKnown RBP7.06□□□□□ -1.28
UBR1-201ENST00000290650 CCDC180Q9P1Z9 1646 aa7.06□□□□□ -1.28
UBR1-201ENST00000290650 ARID3CA6NKF2 412 aa7.06□□□□□ -1.28
UBR1-201ENST00000290650 FAM50AQ14320 339 aaKnown RBP7.05□□□□□ -1.28
UBR1-201ENST00000290650 NEUROD1Q13562 356 aa7.04□□□□□ -1.28
UBR1-201ENST00000290650 MYT1LQ9UL68 1186 aa6.97□□□□□ -1.29
UBR1-201ENST00000290650 BCANQ96GW7 911 aa6.96□□□□□ -1.29
UBR1-201ENST00000290650 GTF3C3Q9Y5Q9 886 aa6.96□□□□□ -1.29
UBR1-201ENST00000290650 CSRNP3Q8WYN3 585 aa6.96□□□□□ -1.3
UBR1-201ENST00000290650 FBLN2P98095 1184 aa6.94□□□□□ -1.3
UBR1-201ENST00000290650 SCAF1Q9H7N4 1312 aaKnown RBP6.94□□□□□ -1.3
UBR1-201ENST00000290650 NEFLP07196 543 aa6.94□□□□□ -1.3
UBR1-201ENST00000290650 RSF1Q96T23 1441 aaPredicted RBP6.93□□□□□ -1.3
UBR1-201ENST00000290650 ERICH6Q7L0X2 663 aa6.93□□□□□ -1.3
UBR1-201ENST00000290650 TRIM52Q96A61 297 aa6.93□□□□□ -1.3
UBR1-201ENST00000290650 DCAF1Q9Y4B6 1507 aa6.93□□□□□ -1.3
UBR1-201ENST00000290650 ZNF326Q5BKZ1 582 aaKnown RBP6.91□□□□□ -1.3
UBR1-201ENST00000290650 CECR2Q9BXF3 1484 aa6.91□□□□□ -1.3
UBR1-201ENST00000290650 RB1CC1Q8TDY2 1594 aa6.89□□□□□ -1.31
UBR1-201ENST00000290650 HIRIP3Q9BW71 556 aaPredicted RBP6.89□□□□□ -1.31
UBR1-201ENST00000290650 ACIN1Q9UKV3 1341 aaKnown RBP6.88□□□□□ -1.31
UBR1-201ENST00000290650 ZNF316A6NFI3 1004 aaPredicted RBP6.88□□□□□ -1.31
UBR1-201ENST00000290650 SLC4A1APQ9BWU0 796 aaKnown RBP6.85□□□□□ -1.31
UBR1-201ENST00000290650 ABCC8Q09428 1581 aa6.84□□□□□ -1.31
UBR1-201ENST00000290650 ZNF777Q9ULD5 760 aaPredicted RBP6.83□□□□□ -1.32
UBR1-201ENST00000290650 WIZO95785 1651 aa6.82□□□□□ -1.32
UBR1-201ENST00000290650 CHIC2Q9UKJ5 165 aa6.82□□□□□ -1.32
UBR1-201ENST00000290650 SENP3-EIF4A1A0A087X0R7 540 aa6.82□□□□□ -1.32
UBR1-201ENST00000290650 MROH2BQ7Z745 1585 aa6.8□□□□□ -1.32
UBR1-201ENST00000290650 MIER1Q8N108 512 aa6.79□□□□□ -1.32
UBR1-201ENST00000290650 CEP162Q5TB80 1403 aa6.79□□□□□ -1.32
UBR1-201ENST00000290650 DDX10Q13206 875 aaKnown RBP6.79□□□□□ -1.32
UBR1-201ENST00000290650 SOGA1O94964 1423 aa6.79□□□□□ -1.32
UBR1-201ENST00000290650 SENP3Q9H4L4 574 aaPredicted RBP6.78□□□□□ -1.32
UBR1-201ENST00000290650 CLIP1P30622 1438 aa6.76□□□□□ -1.33
UBR1-201ENST00000290650 ANP32CO43423 234 aa6.76□□□□□ -1.33
UBR1-201ENST00000290650 NACADO15069 1562 aa6.75□□□□□ -1.33
UBR1-201ENST00000290650 BCL11AQ9H165 835 aa6.74□□□□□ -1.33
UBR1-201ENST00000290650 SALL2Q9Y467 1007 aaPredicted RBP6.74□□□□□ -1.33
UBR1-201ENST00000290650 CCDC88BA6NC98 1476 aa6.74□□□□□ -1.33
UBR1-201ENST00000290650 IRX6P78412 446 aaPredicted RBP6.73□□□□□ -1.33
UBR1-201ENST00000290650 WRNQ14191 1432 aaPredicted RBP eCLIP6.73□□□□□ -1.33
UBR1-201ENST00000290650 BAZ1BQ9UIG0 1483 aaKnown RBP6.72□□□□□ -1.33
UBR1-201ENST00000290650 RRP7BPQ9NSQ0 103 aa6.72□□□□□ -1.33
UBR1-201ENST00000290650 FKBP8Q14318 412 aa6.71□□□□□ -1.34
UBR1-201ENST00000290650 FAM9BQ8IZU0 186 aa6.7□□□□□ -1.34
UBR1-201ENST00000290650 GOLGA3Q08378 1498 aa6.7□□□□□ -1.34
UBR1-201ENST00000290650 SIN3AQ96ST3 1273 aa6.69□□□□□ -1.34
UBR1-201ENST00000290650 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.69□□□□□ -1.34
UBR1-201ENST00000290650 BAZ1AQ9NRL2 1556 aaPredicted RBP6.69□□□□□ -1.34
UBR1-201ENST00000290650 RUSC2Q8N2Y8 1516 aa6.69□□□□□ -1.34
UBR1-201ENST00000290650 KDM2AQ9Y2K7 1162 aa6.69□□□□□ -1.34
UBR1-201ENST00000290650 PLPPR3Q6T4P5 718 aa6.68□□□□□ -1.34
UBR1-201ENST00000290650 TONSLQ96HA7 1378 aa6.68□□□□□ -1.34
UBR1-201ENST00000290650 HNRNPUQ00839 825 aaKnown RBP eCLIP6.67□□□□□ -1.34
UBR1-201ENST00000290650 KANK4Q5T7N3 995 aaPredicted RBP6.66□□□□□ -1.34
UBR1-201ENST00000290650 MTUS2Q5JR59 1369 aa6.65□□□□□ -1.34
UBR1-201ENST00000290650 CLSPNQ9HAW4 1339 aa6.64□□□□□ -1.35
UBR1-201ENST00000290650 TNIKQ9UKE5 1360 aa6.64□□□□□ -1.35
UBR1-201ENST00000290650 DAXXQ9UER7 740 aaPredicted RBP6.64□□□□□ -1.35
UBR1-201ENST00000290650 CHGAP10645 457 aaKnown RBP6.63□□□□□ -1.35
UBR1-201ENST00000290650 NPM2Q86SE8 214 aaKnown RBP6.63□□□□□ -1.35
UBR1-201ENST00000290650 KCNH8Q96L42 1107 aa6.62□□□□□ -1.35
UBR1-201ENST00000290650 CEP164Q9UPV0 1460 aa6.62□□□□□ -1.35
UBR1-201ENST00000290650 FOXD1Q16676 465 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms