Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
USP1O94782 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
USP1O94782 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
USP1O94782 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.45■□□□□ 0.54
USP1O94782 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USP1O94782 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 MIR1238-201ENST00000408483 83 ntBASIC18.45■□□□□ 0.54
USP1O94782 AC007663.1-201ENST00000438948 1240 ntBASIC18.45■□□□□ 0.54
USP1O94782 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.45■□□□□ 0.54
USP1O94782 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.45■□□□□ 0.54
USP1O94782 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.45■□□□□ 0.54
USP1O94782 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
USP1O94782 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP1O94782 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.45■□□□□ 0.54
USP1O94782 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.45■□□□□ 0.54
USP1O94782 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP1O94782 AC099343.3-201ENST00000605834 2503 ntBASIC18.45■□□□□ 0.54
USP1O94782 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.44■□□□□ 0.54
USP1O94782 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
USP1O94782 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.44■□□□□ 0.54
USP1O94782 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.44■□□□□ 0.54
USP1O94782 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.44■□□□□ 0.54
USP1O94782 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.44■□□□□ 0.54
USP1O94782 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.44■□□□□ 0.54
USP1O94782 C2orf69P3-201ENST00000565542 1120 ntBASIC18.44■□□□□ 0.54
USP1O94782 AC010653.2-201ENST00000623505 997 ntBASIC18.44■□□□□ 0.54
USP1O94782 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.44■□□□□ 0.54
USP1O94782 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
USP1O94782 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP1O94782 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
USP1O94782 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.43■□□□□ 0.54
USP1O94782 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.43■□□□□ 0.54
USP1O94782 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.43■□□□□ 0.54
USP1O94782 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.43■□□□□ 0.54
USP1O94782 AC009065.1-201ENST00000564055 1225 ntBASIC18.43■□□□□ 0.54
USP1O94782 MIR3180-4-201ENST00000582223 153 ntBASIC18.43■□□□□ 0.54
USP1O94782 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.43■□□□□ 0.54
USP1O94782 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
USP1O94782 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.43■□□□□ 0.54
USP1O94782 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP1O94782 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.42■□□□□ 0.54
USP1O94782 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.42■□□□□ 0.54
USP1O94782 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP1O94782 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms