Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP2AO43633 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP2AO43633 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP2AO43633 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 AL353692.3-201ENST00000407031 1396 ntBASIC20.47■□□□□ 0.87
CHMP2AO43633 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CHMP2AO43633 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CHMP2AO43633 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CHMP2AO43633 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP2AO43633 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP2AO43633 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP2AO43633 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP2AO43633 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.47■□□□□ 0.87
CHMP2AO43633 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.47■□□□□ 0.87
CHMP2AO43633 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP2AO43633 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP2AO43633 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.47■□□□□ 0.87
CHMP2AO43633 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP2AO43633 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 KRT89P-201ENST00000620027 1478 ntBASIC20.46■□□□□ 0.87
CHMP2AO43633 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 CHCHD2P8-201ENST00000429873 447 ntBASIC20.46■□□□□ 0.87
CHMP2AO43633 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.46■□□□□ 0.87
CHMP2AO43633 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CHMP2AO43633 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP2AO43633 NPAP1P7-201ENST00000613027 823 ntBASIC20.46■□□□□ 0.87
CHMP2AO43633 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP2AO43633 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP2AO43633 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP2AO43633 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHMP2AO43633 AC009113.1-201ENST00000570267 2443 ntBASIC20.46■□□□□ 0.87
CHMP2AO43633 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP2AO43633 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CHMP2AO43633 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 AP002383.4-201ENST00000442518 975 ntBASIC20.45■□□□□ 0.86
CHMP2AO43633 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP2AO43633 AP002414.4-201ENST00000589764 1148 ntBASIC20.45■□□□□ 0.86
CHMP2AO43633 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.45■□□□□ 0.86
CHMP2AO43633 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP2AO43633 AL020996.1-203ENST00000536896 2307 ntBASIC20.45■□□□□ 0.86
CHMP2AO43633 LINC00602-201ENST00000629776 2065 ntBASIC20.45■□□□□ 0.86
CHMP2AO43633 KRT18P1-202ENST00000452408 1331 ntBASIC20.45■□□□□ 0.86
CHMP2AO43633 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CHMP2AO43633 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
CHMP2AO43633 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP2AO43633 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CHMP2AO43633 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms