Protein–RNA interactions for Protein: Q9UHP3

USP25, Ubiquitin carboxyl-terminal hydrolase 25, humanhuman

Predictions only

Length 1,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP25Q9UHP3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP25Q9UHP3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP25Q9UHP3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP25Q9UHP3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP25Q9UHP3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 MYLKP1-201ENST00000509077 1580 ntBASIC20.93■□□□□ 0.94
USP25Q9UHP3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 AL023284.2-201ENST00000405850 579 ntBASIC20.93■□□□□ 0.94
USP25Q9UHP3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 SLC25A1P4-201ENST00000567977 778 ntBASIC20.93■□□□□ 0.94
USP25Q9UHP3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP25Q9UHP3 REXO1L9P-201ENST00000604264 2108 ntBASIC20.93■□□□□ 0.94
USP25Q9UHP3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
USP25Q9UHP3 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.93■□□□□ 0.94
USP25Q9UHP3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 AC008556.1-201ENST00000610908 2040 ntBASIC20.92■□□□□ 0.94
USP25Q9UHP3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 AC108860.2-201ENST00000562760 2183 ntBASIC20.92■□□□□ 0.94
USP25Q9UHP3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 AC097488.1-201ENST00000507834 756 ntBASIC20.92■□□□□ 0.94
USP25Q9UHP3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 AC113410.3-201ENST00000623366 203 ntBASIC20.92■□□□□ 0.94
USP25Q9UHP3 AL049637.2-201ENST00000641778 930 ntBASIC20.92■□□□□ 0.94
USP25Q9UHP3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP25Q9UHP3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.92■□□□□ 0.94
USP25Q9UHP3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
USP25Q9UHP3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
USP25Q9UHP3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 MCCD1P1-208ENST00000445732 328 ntBASIC20.91■□□□□ 0.94
USP25Q9UHP3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.91■□□□□ 0.94
USP25Q9UHP3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP25Q9UHP3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 AL158047.1-201ENST00000445918 881 ntBASIC20.9■□□□□ 0.94
USP25Q9UHP3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
USP25Q9UHP3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP25Q9UHP3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms