Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.35■□□□□ 0.53
LHX3Q9UBR4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX3Q9UBR4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 TSPY12P-201ENST00000421279 868 ntBASIC18.34■□□□□ 0.53
LHX3Q9UBR4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 AC090616.6-201ENST00000582640 721 ntBASIC18.34■□□□□ 0.53
LHX3Q9UBR4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX3Q9UBR4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.33■□□□□ 0.53
LHX3Q9UBR4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 AP002414.4-201ENST00000589764 1148 ntBASIC18.33■□□□□ 0.52
LHX3Q9UBR4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 AC092119.3-201ENST00000612618 583 ntBASIC18.33■□□□□ 0.52
LHX3Q9UBR4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 BICD1-207ENST00000551848 1962 ntBASIC18.33■□□□□ 0.52
LHX3Q9UBR4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.33■□□□□ 0.52
LHX3Q9UBR4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 KRT18P1-202ENST00000452408 1331 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 AL845331.1-201ENST00000424978 1190 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 KRT18P65-201ENST00000439811 1286 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 GUSBP12-201ENST00000513727 720 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.32■□□□□ 0.52
LHX3Q9UBR4 TPSP2-201ENST00000561760 610 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 IGHV3-41-201ENST00000613121 348 ntBASIC18.32■□□□□ 0.52
LHX3Q9UBR4 AC009154.2-201ENST00000621177 724 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms