Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 HLA-L-209ENST00000420110 1011 ntBASIC18.02■□□□□ 0.48
MKS1Q9NXB0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 AC009065.1-201ENST00000564055 1225 ntBASIC18.02■□□□□ 0.48
MKS1Q9NXB0 AD000864.1-201ENST00000624076 2295 ntBASIC18.02■□□□□ 0.47
MKS1Q9NXB0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 AC099343.3-201ENST00000605834 2503 ntBASIC18.02■□□□□ 0.47
MKS1Q9NXB0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.47
MKS1Q9NXB0 AL355312.1-201ENST00000407115 2176 ntBASIC18.01■□□□□ 0.47
MKS1Q9NXB0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 AC116562.2-201ENST00000507042 360 ntBASIC18.01■□□□□ 0.47
MKS1Q9NXB0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 MIR3180-4-201ENST00000582223 153 ntBASIC18.01■□□□□ 0.47
MKS1Q9NXB0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
MKS1Q9NXB0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18■□□□□ 0.47
MKS1Q9NXB0 KRT18P23-201ENST00000435622 1283 ntBASIC18■□□□□ 0.47
MKS1Q9NXB0 AC090192.1-201ENST00000517740 490 ntBASIC18■□□□□ 0.47
MKS1Q9NXB0 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 KRT18P6-201ENST00000555540 1265 ntBASIC18■□□□□ 0.47
MKS1Q9NXB0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18■□□□□ 0.47
MKS1Q9NXB0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18■□□□□ 0.47
MKS1Q9NXB0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
MKS1Q9NXB0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
MKS1Q9NXB0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MKS1Q9NXB0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18■□□□□ 0.47
MKS1Q9NXB0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MKS1Q9NXB0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 AC099398.1-201ENST00000567919 2776 ntBASIC17.99■□□□□ 0.47
MKS1Q9NXB0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 C1QBPP2-201ENST00000528754 825 ntBASIC17.99■□□□□ 0.47
MKS1Q9NXB0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MKS1Q9NXB0 AC006058.3-201ENST00000606217 1069 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms