Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
RTFDC1Q9BY42 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 AC107918.4-202ENST00000641623 219 ntBASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 LINC01126-201ENST00000623515 1646 ntBASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RTFDC1Q9BY42 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 GPX1P2-201ENST00000429271 606 ntBASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 KRT18P3-201ENST00000451602 1288 ntBASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 AP000867.4-201ENST00000641616 219 ntBASIC22.08■■□□□ 1.13
RTFDC1Q9BY42 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.08■■□□□ 1.12
RTFDC1Q9BY42 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NKAPP1-205ENST00000585790 367 ntBASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 AC099343.3-201ENST00000605834 2503 ntBASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RTFDC1Q9BY42 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 YBX2P1-201ENST00000394192 760 ntBASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 FIS1-203ENST00000442303 631 ntTSL 3 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 AC105339.3-201ENST00000560043 636 ntBASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 HOTTIP_1.1-201ENST00000620415 57 ntBASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RTFDC1Q9BY42 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms