Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 AL662844.1-201ENST00000546340 181 ntBASIC17.76■□□□□ 0.43
LMX1AQ8TE12 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 MIR5100-201ENST00000579544 119 ntBASIC17.76■□□□□ 0.43
LMX1AQ8TE12 SLC25A6P4-201ENST00000586535 553 ntBASIC17.76■□□□□ 0.43
LMX1AQ8TE12 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 AC068472.1-201ENST00000474589 881 ntBASIC17.75■□□□□ 0.43
LMX1AQ8TE12 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1AQ8TE12 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 LINC00602-201ENST00000629776 2065 ntBASIC17.74■□□□□ 0.43
LMX1AQ8TE12 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.74■□□□□ 0.43
LMX1AQ8TE12 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 AC106795.1-205ENST00000512851 1056 ntBASIC17.73■□□□□ 0.43
LMX1AQ8TE12 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 AC114341.1-201ENST00000618070 349 ntBASIC17.73■□□□□ 0.43
LMX1AQ8TE12 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1AQ8TE12 LINC01126-201ENST00000623515 1646 ntBASIC17.72■□□□□ 0.43
LMX1AQ8TE12 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 AC005082.1-201ENST00000413042 2259 ntBASIC17.72■□□□□ 0.43
LMX1AQ8TE12 BCL2-203ENST00000589955 5011 ntBASIC17.72■□□□□ 0.43
LMX1AQ8TE12 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms