Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC099343.3-201ENST00000605834 2503 ntBASIC17.79■□□□□ 0.44
HDAC3O15379 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC3O15379 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HDAC3O15379 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC3O15379 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC3O15379 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.79■□□□□ 0.44
HDAC3O15379 AC093010.1-201ENST00000473625 1624 ntBASIC17.79■□□□□ 0.44
HDAC3O15379 AC080080.1-201ENST00000625121 2420 ntBASIC17.79■□□□□ 0.44
HDAC3O15379 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.79■□□□□ 0.44
HDAC3O15379 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC3O15379 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC3O15379 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC3O15379 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC3O15379 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HDAC3O15379 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.78■□□□□ 0.44
HDAC3O15379 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC3O15379 AL163051.1-201ENST00000569214 1512 ntBASIC17.78■□□□□ 0.44
HDAC3O15379 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HDAC3O15379 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.78■□□□□ 0.44
HDAC3O15379 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HDAC3O15379 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC3O15379 B3GAT3P1-201ENST00000471720 806 ntBASIC17.78■□□□□ 0.44
HDAC3O15379 AP000692.2-201ENST00000608391 879 ntBASIC17.78■□□□□ 0.44
HDAC3O15379 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HDAC3O15379 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC3O15379 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HDAC3O15379 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.77■□□□□ 0.44
HDAC3O15379 MIR149-201ENST00000384879 89 ntBASIC17.77■□□□□ 0.44
HDAC3O15379 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.77■□□□□ 0.44
HDAC3O15379 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.77■□□□□ 0.44
HDAC3O15379 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
HDAC3O15379 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.77■□□□□ 0.44
HDAC3O15379 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.77■□□□□ 0.44
HDAC3O15379 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC3O15379 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HDAC3O15379 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC3O15379 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.76■□□□□ 0.43
HDAC3O15379 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HDAC3O15379 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC3O15379 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC3O15379 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms