Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM38O00635 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM38O00635 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TRIM38O00635 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.37■□□□□ 0.53
TRIM38O00635 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM38O00635 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM38O00635 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM38O00635 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRIM38O00635 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM38O00635 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRIM38O00635 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM38O00635 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM38O00635 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
TRIM38O00635 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TRIM38O00635 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM38O00635 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.36■□□□□ 0.53
TRIM38O00635 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
TRIM38O00635 IRX1P1-201ENST00000438849 1838 ntBASIC18.36■□□□□ 0.53
TRIM38O00635 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.36■□□□□ 0.53
TRIM38O00635 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM38O00635 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM38O00635 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM38O00635 AC011498.5-201ENST00000592027 486 ntBASIC18.36■□□□□ 0.53
TRIM38O00635 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM38O00635 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM38O00635 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 AL691432.3-201ENST00000621860 400 ntBASIC18.36■□□□□ 0.53
TRIM38O00635 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM38O00635 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM38O00635 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
TRIM38O00635 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM38O00635 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM38O00635 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM38O00635 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM38O00635 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRIM38O00635 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM38O00635 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms