Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
SDCBPO00560 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.56■□□□□ 0.08
SDCBPO00560 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SDCBPO00560 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SDCBPO00560 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SDCBPO00560 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 GCSHP5-201ENST00000443090 522 ntBASIC15.56■□□□□ 0.08
SDCBPO00560 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.56■□□□□ 0.08
SDCBPO00560 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.56■□□□□ 0.08
SDCBPO00560 KRT8P45-201ENST00000414328 1447 ntBASIC15.56■□□□□ 0.08
SDCBPO00560 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.56■□□□□ 0.08
SDCBPO00560 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 FSCN1P1-201ENST00000568912 1481 ntBASIC15.56■□□□□ 0.08
SDCBPO00560 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
SDCBPO00560 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.56■□□□□ 0.08
SDCBPO00560 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SDCBPO00560 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.56■□□□□ 0.08
SDCBPO00560 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SDCBPO00560 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SDCBPO00560 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 AC008556.1-201ENST00000610908 2040 ntBASIC15.55■□□□□ 0.08
SDCBPO00560 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.55■□□□□ 0.08
SDCBPO00560 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.55■□□□□ 0.08
SDCBPO00560 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.55■□□□□ 0.08
SDCBPO00560 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
SDCBPO00560 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.55■□□□□ 0.08
SDCBPO00560 B3GAT3P1-201ENST00000471720 806 ntBASIC15.55■□□□□ 0.08
SDCBPO00560 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 AP001412.1-201ENST00000608405 714 ntBASIC15.55■□□□□ 0.08
SDCBPO00560 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.55■□□□□ 0.08
SDCBPO00560 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.55■□□□□ 0.08
SDCBPO00560 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SDCBPO00560 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.54■□□□□ 0.08
SDCBPO00560 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 AC011506.1-201ENST00000474329 610 ntBASIC15.54■□□□□ 0.08
SDCBPO00560 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 AC130371.2-201ENST00000619443 611 ntBASIC15.54■□□□□ 0.08
SDCBPO00560 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.54■□□□□ 0.08
SDCBPO00560 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SDCBPO00560 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SDCBPO00560 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
SDCBPO00560 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SDCBPO00560 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
SDCBPO00560 KRT8P3-201ENST00000519669 1449 ntBASIC15.53■□□□□ 0.08
SDCBPO00560 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
SDCBPO00560 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.53■□□□□ 0.08
SDCBPO00560 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.53■□□□□ 0.08
SDCBPO00560 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms