Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.47■□□□□ 0.55
AP3B1O00203 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
AP3B1O00203 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.46■□□□□ 0.55
AP3B1O00203 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.46■□□□□ 0.55
AP3B1O00203 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
AP3B1O00203 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 AC010947.1-201ENST00000623454 693 ntBASIC18.46■□□□□ 0.55
AP3B1O00203 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 AC092865.7-201ENST00000641832 219 ntBASIC18.46■□□□□ 0.55
AP3B1O00203 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
AP3B1O00203 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP3B1O00203 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.45■□□□□ 0.54
AP3B1O00203 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
AP3B1O00203 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
AP3B1O00203 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP3B1O00203 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP3B1O00203 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.44■□□□□ 0.54
AP3B1O00203 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 AC018470.1-201ENST00000624790 3129 ntBASIC18.44■□□□□ 0.54
AP3B1O00203 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP3B1O00203 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP3B1O00203 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP3B1O00203 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.44■□□□□ 0.54
AP3B1O00203 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP3B1O00203 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 CYP2D8P-201ENST00000433633 1490 ntBASIC18.44■□□□□ 0.54
AP3B1O00203 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
AP3B1O00203 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP3B1O00203 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
AP3B1O00203 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP3B1O00203 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms