Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19■□□□□ 0.63
CCDC188H7C350 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC188H7C350 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19■□□□□ 0.63
CCDC188H7C350 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC188H7C350 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19■□□□□ 0.63
CCDC188H7C350 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC188H7C350 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC188H7C350 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC188H7C350 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC188H7C350 AC011506.1-201ENST00000474329 610 ntBASIC18.99■□□□□ 0.63
CCDC188H7C350 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC188H7C350 CR392000.1-201ENST00000624770 1228 ntBASIC18.99■□□□□ 0.63
CCDC188H7C350 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CCDC188H7C350 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC188H7C350 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC188H7C350 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.98■□□□□ 0.63
CCDC188H7C350 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CCDC188H7C350 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CCDC188H7C350 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC188H7C350 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 B3GAT3P1-201ENST00000471720 806 ntBASIC18.98■□□□□ 0.63
CCDC188H7C350 RNA5SP413-201ENST00000516373 109 ntBASIC18.98■□□□□ 0.63
CCDC188H7C350 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.98■□□□□ 0.63
CCDC188H7C350 AP000692.2-201ENST00000608391 879 ntBASIC18.98■□□□□ 0.63
CCDC188H7C350 MIR6786-201ENST00000616843 113 ntBASIC18.98■□□□□ 0.63
CCDC188H7C350 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC188H7C350 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC188H7C350 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.98■□□□□ 0.63
CCDC188H7C350 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC188H7C350 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC188H7C350 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC188H7C350 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC188H7C350 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC188H7C350 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC188H7C350 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC188H7C350 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC188H7C350 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC188H7C350 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CCDC188H7C350 RN7SL471P-201ENST00000580476 299 ntBASIC18.97■□□□□ 0.63
CCDC188H7C350 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC188H7C350 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC188H7C350 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC188H7C350 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CCDC188H7C350 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC188H7C350 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC188H7C350 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CCDC188H7C350 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC188H7C350 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC188H7C350 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC188H7C350 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC188H7C350 AC099398.1-201ENST00000567919 2776 ntBASIC18.96■□□□□ 0.63
CCDC188H7C350 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC188H7C350 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC188H7C350 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC188H7C350 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms