Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FLJ13224-201ENST00000313737 1514 ntBASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 PHGDH-209ENST00000641074 1780 ntBASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 AL096828.2-201ENST00000567259 1965 ntBASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
HIF3AQ9Y2N7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HIF3AQ9Y2N7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 PKD1P1-201ENST00000458669 6805 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 LETM1P2-201ENST00000597330 2178 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 EGLN1P1-201ENST00000531623 762 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 AC009065.1-201ENST00000564055 1225 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 MIR3180-4-201ENST00000582223 153 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 MIR4497-201ENST00000583208 89 ntBASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HIF3AQ9Y2N7 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 AC026471.1-201ENST00000564629 3026 ntBASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 AC104390.1-201ENST00000555663 520 ntBASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 AC112497.1-201ENST00000624824 639 ntBASIC16.5■□□□□ 0.23
HIF3AQ9Y2N7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms