Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.61■□□□□ 0.89
COL20A1Q9P218 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL20A1Q9P218 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 KRT8P10-201ENST00000450021 1447 ntBASIC20.6■□□□□ 0.89
COL20A1Q9P218 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL20A1Q9P218 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL20A1Q9P218 AC073592.3-201ENST00000625118 1834 ntBASIC20.6■□□□□ 0.89
COL20A1Q9P218 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 AC093503.3-201ENST00000624917 2352 ntBASIC20.59■□□□□ 0.89
COL20A1Q9P218 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 AC018445.3-201ENST00000624177 1945 ntBASIC20.59■□□□□ 0.89
COL20A1Q9P218 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 AC096582.2-201ENST00000510860 516 ntBASIC20.59■□□□□ 0.89
COL20A1Q9P218 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL20A1Q9P218 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL20A1Q9P218 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL20A1Q9P218 KRT18P65-201ENST00000439811 1286 ntBASIC20.58■□□□□ 0.89
COL20A1Q9P218 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.58■□□□□ 0.89
COL20A1Q9P218 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.58■□□□□ 0.88
COL20A1Q9P218 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.58■□□□□ 0.88
COL20A1Q9P218 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL20A1Q9P218 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.58■□□□□ 0.88
COL20A1Q9P218 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL20A1Q9P218 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.58■□□□□ 0.88
COL20A1Q9P218 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL20A1Q9P218 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.57■□□□□ 0.88
COL20A1Q9P218 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms