Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 KRASP1-201ENST00000407852 552 ntBASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 AC080080.1-201ENST00000625121 2420 ntBASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28BQ9BUN5 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 AC108860.2-201ENST00000562760 2183 ntBASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28BQ9BUN5 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 KRT18P55-202ENST00000578578 1546 ntBASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 AC239809.2-201ENST00000415381 517 ntBASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 AC142086.2-201ENST00000569753 217 ntBASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 AL023875.1-201ENST00000640777 796 ntBASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 KRT8P50-201ENST00000562022 1438 ntBASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms