Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 TP73-AS1-207ENST00000624167 988 ntBASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.74■□□□□ 0.91
SYNGAP1Q96PV0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 MIR149-201ENST00000384879 89 ntBASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 AC120114.3-201ENST00000611923 658 ntBASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNGAP1Q96PV0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 RNA5SP419-201ENST00000515908 135 ntBASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 AC114341.1-201ENST00000618070 349 ntBASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SYNGAP1Q96PV0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 MIR5100-201ENST00000579544 119 ntBASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 AL591684.3-201ENST00000605187 298 ntBASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 AL773604.1-201ENST00000617417 272 ntBASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNGAP1Q96PV0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
SYNGAP1Q96PV0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNGAP1Q96PV0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNGAP1Q96PV0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNGAP1Q96PV0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms